Genomic Intelligence

List available models for a task. Use to discover model ids before passing one as the `model` argument to a predict tool. The same catalog is also available as the resource `gi://models`.

Fetch a gene's reference sequence from Ensembl and store it. Returns a handle ({ref, name, length, preview, ...}). Pass the `ref` to predict_* tools — the bases stay server-side. For expression, use fetch_gene_for_expression instead (it prepares the TSS-centred windo

Fetch a genomic region by coordinates from Ensembl and store it. For "find the genes in chr8:127,680,000-127,800,000"-style requests: resolves a coordinate range to reference sequence and returns a handle ({ref, name, length, ...}) to pass to find_genes / predict_* — the bas

Fetch a gene's sequence prepared for expression prediction. Resolves the gene's TSS via Ensembl and returns the exact TSS-centred window the expression model needs, as a handle to pass to predict_expression(sequence_ref=...).

Load a bundled demo reference sequence and return a handle. The server ships one curated, task-correct positive control per task (list them via the gi://sequences resource) — e.g. `expression_hbb_k562` is a ready-to-use K562 expression window for predict_expression.

Store a human-pasted sequence and return a handle to re-use it. For a sequence you've already pasted into the conversation, this gives back a short handle so you can run several tasks on it without re-pasting the bases in each predict_* call. Note that the full seque

Predict promoter regions (G0). Up to 500,000 bp. Returns the {data, meta} envelope: data.regions lists predicted promoters with start/end/score.

Predict splice donor/acceptor sites (G0 BigBird). Up to 500,000 bp.

Predict enhancer activity (G0 DeepSTARR). Up to 500,000 bp.

Chromatin annotation across 919 features (G0 DeepSEA). Up to 500,000 bp.

Predict a gene's expression from a TSS-centred input window. Expression is cell-type-specific, so `description` (cell type / assay context, e.g. 'K562 cell line') is REQUIRED — the API rejects requests without it. Requires exactly 9,198 bp centred on the TSS; call fe

Find genes (transcript intervals) in a genomic region (async, ~8-25s). Gene-finding: detects transcript boundaries (TSS + PolyA) and returns one interval per predicted transcript — start/end, strand, a confidence score, and predicted TSS/PolyA positions (BED-style feature

Find genes in a sequence, then predict each gene's expression (composite). Server-side chaining in ONE call: finds genes (transcript intervals, with their TSS) in the sequence, then predicts expression off each discovered TSS in the given experimental context. This is the ri

Poll an async job once. Returns the {data, meta} result if complete, a progress envelope if still running, or an error envelope if it failed.

List the caller's recent async jobs (also available as gi://jobs/recent).